1. Golden Sun
2. Metroid: Zero Mission
3. Legend of Zelda: The Minish Cap
4. Metroid: Fusion
5. Castlevania: Aria of Sorrow
6. Castlevania: Circle of the Moon
7. Advance Wars
8. Mega Man Zero
9. Super Mario Advance 4: Super Mario Bros. 3
10. Mega Man & Bass
11. Final Fantasy VI Advance
12. Pokémon: Emerald
13. Mario & Luigi: Superstar Saga
14. The Legend of Zelda: A Link to the Past: Four Swords Edition
15. Final Fantasy V Advance
16. Super Mario Advance 2: Super Mario World
17. Donkey Kong Country 2: Diddy's Kong Quest
18. Sonic Advance
19. Final Fantasy Tactics Advance
20. Sword of Mana
21. Metal Slug Advance
22. Gunstar Super Heroes
23. Golden Sun: The Lost Age
24. Astro Boy: The Omega Factor
25. Tactics Ogre
26. Donkey Kong Country
27. Drill Dozer
28. Contra Advance: The Aliens Wars EX
29. Ninja Five-0
30. Shining Force: Resurrection of the Dark Dragon
31. Phantasy Star Collection
32. Super Mario Advance (Super Mario Bros. 2)
33. Final Fantasy IV Advance
34. Mega Man Battle Network 2
35. Final Fight One
36. Final Fantasy I & II: Dawn of Souls
37. The Legend of Zelda
38. Fire Emblem
39. Zelda II: The Adventure of Link
40. Mega Man Zero 2
41. Tales of Phantasia
42. WarioWare: Twisted!
43. Super Mario Bros.
44. Onimusha Tactics
45. Breath of Fire
46. Gradius: Galaxies
47. Breath of Fire II
48. R-Type III: Third Lightning
49. Dragon Quest Monster: Caravan Heart
50. Double Dragon Advance
51. Banjo-Kazooie: Grunty's Revenge
52. F-Zero: Maximum Velocity
53. Donkey Kong Country 3: Dixie's Double Trouble
54: Konami Collector's Series: Arcade Advanced
55. Castlevania
56. The Lost Vikings
57. Sonic Advance 2
58. Advance Wars 2: Black Hole Rising
59. Summon Night: Swordcraft Story
60. Bomberman
61. Mario vs Donkey Kong
62. Puyo Pop
63. Mega Man Zero 4
64. Riviera: The Promised Land
65. Fire Emblem: The Sacred Stones
66. Castlevania: Harmony of Dissonance
67. Sonic Advance 3
68. Earthworm Jim
69. Pac-Man Collection
70. Pinball of the Dead
71. Pokemon Pinball: Ruby & Sapphire
72. Bubble Bobble Old & New
73. Mega Man Zero 3
74. Lunar Legend
75. Advance Guardian Heroes
76. Summon Night: Swordcraft Story 2
77. Tony Hawk's Underground
78. Naruto: Ninja Council
79. Tony Hawk's Underground 2
80. Super Mario Advance 3: Yoshi's Island
81. Spider-Man: Mysterio's Menace
82. Klonoa: Empire of Dreams
83. Metroid
84. Spider-Man: The Movie
85. Super Ghouls 'N Ghosts
86. Spider-Man 2
87. Super Robot Taisen
88. Super Street Fighter II Revival
89. Donkey Kong: King of Swing
90. Monster Rancher Advance 2
91. Street Fighter Alpha 3
92. Game and Watch Gallery 3
93. Mortal Kombat: Deadly Alliance
94. Ice Climber
95. River City Ransom
96. Frogger Adventures: Temple of the Frog
97. Harvest Moon: Friends of Mineral Town
98. Crash Bandicoot Purple: Ripto's Rampage
99. Klonoa 2: Dream Champ Tournament
If anyone needs an idea for #100 I would suggest Iridion II