Though I hear more about terrible mismanagement from companies like Square Enix.... Who knows how they are still in business....
If they continue like they have been (which they will) they won't be in business for much longer. They've decided to almost entirely forgo their handheld fanbase (more in the West than Japan, admittedly) in favor of iOS games and are pouring an insane amount of their budgets into amazing graphics, but shallow story and gameplay, which has turned into just a constant bleed of profits. Shoving Final Fantasy XIII down everyone's throats certainly hasn't helped. Their recent announcement of porting Final Fantasy VI to iOS and once again leaving out their loyal handheld customers solidifies this. If they don't change something soon, they'll go under due to the constant loss of money.
This is a mixed post. Ios has been far more profitable for Final Fantasy than Handhelds have been in recent days.
Why? Because they are to big. In order to manage both sides with companies like Taito, Crystal Dynamics, etc. they have to make double what they were making before. Most of the money that came to Square Enix this gen was from Eidos. At the same time, Square can't afford to pay everyone, manage all these companies, and distribute games WW without a huge loss. Especially since there best selling games are from Eidos, who has higher budget games, then most of their own in japan. So Square WILL inevitably be screwed.
CAPCOM on the other hand is a different issues. CAPCOM can't keep up with modern budgets. They have few franchises that bring the, money, and taking a risk like reviving old franchises with AAA budgets is too high of a risk, especially if the fanbase is not there. I know certain fans of series like say, Megaman, are upset (and wrongfully acting like Inafune was not the reason for the profit downfall of the series) and I understand that but there is no way that would work. It's why Capcom is moving to IOS and handhelds slowly.
CAPCOM won't be bringing us SFV or other entries in other series outside of RE for awhile. Capcom has not had enough money since 2003 to bring big budget titles because they don't have enough money to Market, distribute, and ship WW their games among other issues. Resident Evil 6 BARELY made back the budget price, I believe with that multi-million budget game they got back $6000 in profits! Of course they have no money.
A solution would be them to focus more on XBL arcade and remakes, and also IOS/3DS/PSvita. Sure it will change Capcoms game strategy but they will at least be alive. Capcom has a chance to be saved. Square Enix however. is inevitably screwed. They will implode but they may survive it.