As far as I've seen, this is going to be every copy available, regardless of retailer. 1st print package of sweetness, same as they did with Shin Megami Tensei: Nocturne, Persona 3, etc.
Per their twitters - "The 1st print of Shin Megami Tensei 4 will include a Limited Edition Box Set with a Strategy&Design Book, Music Collection CD, & slipcase."