So I got an N64 at a flea market today, with 2 controllers(tight sticks), ac coord, and tv cord.  Also got a copy of NES Karate Champ 3 screw.  I bought all of this for $20.
After I hooked up the N64 I was getting controller not found.  I plugged in my N64 console and tested both newly purchased controllers and they work great.
I then went back to my flea market deal and tried many more times.  I tried all 4 ports and very rarely/randomly it would work.  
I took apart the whole system and cleaned it thoroughly with rubbing alcohol.  Any suggestions?